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Contains CPPs with natural or modified amino acids.
1.1. POSEIDON
Contains heterogeneous experimental data regarding CPP (natural and non-natural amino acids) activity measurements (.csv format), which are:
- peptide name,
- target cell line CPP was tested on cell penetration ability,
- delivered molecule/protein,
- paper PubMed ID,
- cellular uptake measurement + measurement units,
- CPP+cargo concentration,
- incubation time,
- incubation temperature,
- determination method,
- uptake type,
- sequence.
1.1. POSEIDON
Contains heterogeneous experimental data regarding CPP (natural and non-natural amino acids) activity measurements (.csv format), which are:
- peptide name,
- target cell line CPP was tested on cell penetration ability,
- delivered molecule/protein,
- paper PubMed ID,
- cellular uptake measurement + measurement units,
- CPP+cargo concentration,
- incubation time,
- incubation temperature,
- determination method,
- uptake type,
- sequence.
### 2. Natural CPPs
Contains only sequences with natural amino acids.
2.1. CPPBase
2.1. CPPBase
Contains sequences of CPPs with experimentally proved activity in .fasta format.
Contains sequences of CPPs with experimentally proved activity in .fasta format.
2.2. Experimental and Experimental2
2.2. Experimental and Experimental2
Contain more sequences of CPPs with experimentally proved activity in .txt format.
Contain more sequences of CPPs with experimentally proved activity in .txt format.
2.3. Experimental_high_uptake
2.3. Experimental_high_uptake
Contains CPP sequences with high (but not stated) uptake in .txt format.
Contains CPP sequences with high (but not stated) uptake in .txt format.
2.4. Balanced_dataset
2.4. Balanced_dataset
Represents a balanced dataset of CPPs and non-CPPs; often used for model benchmarking.
Represents a balanced dataset of CPPs and non-CPPs; often used for model benchmarking.
### 3. Non-CPPs
Contains negative CPP samples in .txt format.
3.1. Generated
3.1. Generated
Contains randomly generated sequences treated as negative.
Contains randomly generated sequences treated as negative.
3.2. Experimental
3.2. Experimental
Contains non-CPP sequences shown not to demonstrate activity experimentally.
Contains non-CPP sequences shown not to demonstrate activity experimentally.
### 4. Non-Natural CPPs
Contains CPPs consisting of non-natural amino acids.
4.1. CPPBase_modified
4.1. CPPBase_modified
Contains a list of modified CPPs with experimentally proved activity in .fasta format.
Contains a list of modified CPPs with experimentally proved activity in .fasta format.
4.2. CPPBase_modified_symbols
4.2. CPPBase_modified_symbols
Contains a list of abbreviations for modified amino acids in .txt format (ABBREVIATION: NAME; ...: ...).
Contains a list of abbreviations for modified amino acids in .txt format (ABBREVIATION: NAME; ...: ...).
## Useful tools :bookmark_tabs:

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